Stem-loop pab-MIR396n

Accession

MI0036660

Description

Picea abies pab-MIR396n precursor miRNA

Literature search

1 open access papers mention pab-MIR396n
(5 sentences)

Sequence

632633 reads, 13987.0 reads per million, 101 experiments

gaauccugucauauuuUUCCACGGCUUUCUUGAACUUgaagaucaguaguguuugcggcggccgaccgaucguaucgagaacagauccgaaucacaggUUCAAGAAAGUCGUGGGAAAauauagagggauuc
(((((((...((((((((((((((((((((((((((((..((((.((..(...((((((((....))).)))))...)..)).)))).......))))))))))))))))))))))))))))...)))))))

Structure

       guc                            -----aa    a  ag guu     -   c 
gaauccu   auauuuUUCCACGGCUUUCUUGAACUUg       gauc gu  u   ugcgg cgg c
|||||||   ||||||||||||||||||||||||||||       |||| ||  |   ||||| |||  
cuuaggg   uauaAAAGGGUGCUGAAAGAACUUggac       cuag ca  a   augcu gcc g
       aga                            acuaagc    a  ag gcu     a   a 

Annotation confidence High

Genome context

MA_20512: 71223-71354 [-]

Mature pab-miR396n-5p

• Accession: MIMAT0044758
• Description: Picea abies pab-miR396n-5p mature miRNA
• Sequence: 17 - UUCCACGGCUUUCUUGAACUU - 37
• Evidence: experimental ; Illumina [1]

Mature pab-miR396n-3p

• Accession: MIMAT0057509
• Description: Picea abies pab-miR396n-3p mature miRNA
• Sequence: 99 - UUCAAGAAAGUCGUGGGAAA - 118
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918