Stem-loop pab-MIR396p

Accession

MI0036662

Description

Picea abies pab-MIR396p precursor miRNA

Literature search

1 open access papers mention pab-MIR396p
(5 sentences)

Sequence

618043 reads, 13687.0 reads per million, 101 experiments

gaaugcugccauacuuUUCCACGGCUUUCUUGAACUUcccgaccgcuaacagauccggauaagaagCUCAAGCAAGGCGUGGGAAAauauagagggauuc
((((.((.(.(((.(((((((((.(((.(((((.((((....(((..........)))....)))).))))).))).))))))))).))).).)).))))

Structure

    g  g c   c         G   U     A    ccga   cuaa 
gaau cu c aua uuUUCCACG CUU CUUGA CUUc    ccg    c
|||| || | ||| ||||||||| ||| ||||| ||||    |||     
cuua gg g uau AAAGGGUGC GAA GAACU gaag    ggc    a
    g  a a   a         G   C     C    aaua   cuag 

Annotation confidence High

Genome context

MA_636722: 714-813 [+]

Mature pab-miR396p-5p

• Accession: MIMAT0044760
• Description: Picea abies pab-miR396p-5p mature miRNA
• Sequence: 17 - UUCCACGGCUUUCUUGAACUU - 37
• Evidence: experimental ; Illumina [1]

Mature pab-miR396p-3p

• Accession: MIMAT0057511
• Description: Picea abies pab-miR396p-3p mature miRNA
• Sequence: 67 - CUCAAGCAAGGCGUGGGAAA - 86
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918