Stem-loop pab-MIR396s

Accession

MI0036665

Description

Picea abies pab-MIR396s precursor miRNA

Literature search

1 open access papers mention pab-MIR396s
(5 sentences)

Sequence

628867 reads, 13900.0 reads per million, 101 experiments

auccuguuauauuuUUCCACGGCUUUCUUGAACUUcacgaucaguacuguuggcagcggccgcauagauaacagauccggaugacaagCUCAAGAAAGCCGUGGGAAAauauagaaggau
(((((.(((((((((((((((((((((((((.((((((((((.((.((((((((....)))).))))...)).))))..).)))..)).))))))))))))))))))))))))).)))))

Structure

     g                         A  --   - --    a  --a    -    a 
auccu uuauauuuUUCCACGGCUUUCUUGA CU  Uca c  gauc gu   cugu uggc g
||||| ||||||||||||||||||||||||| ||  ||| |  |||| ||   |||| ||||  
uagga gauauaAAAGGGUGCCGAAAGAACU ga  agu g  cuag ca   gaua gccg c
     a                         C  ac   a gc    a  aua    c    g 

Annotation confidence High

Genome context

MA_97867: 7878-7997 [-]

Mature pab-miR396s-5p

• Accession: MIMAT0044763
• Description: Picea abies pab-miR396s-5p mature miRNA
• Sequence: 15 - UUCCACGGCUUUCUUGAACUU - 35
• Evidence: experimental ; Illumina [1]

Mature pab-miR396s-3p

• Accession: MIMAT0057512
• Description: Picea abies pab-miR396s-3p mature miRNA
• Sequence: 89 - CUCAAGAAAGCCGUGGGAAA - 108
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918