Stem-loop pab-MIR396u

Accession

MI0036667

Description

Picea abies pab-MIR396u precursor miRNA

Literature search

1 open access papers mention pab-MIR396u
(5 sentences)

Sequence

46846 reads, 1898.0 reads per million, 102 experiments

uuccgucauauuUUUCCACAUGCUUUCUUGAACUuagugcucaggugaugucucagaagacgaaaucguguuaaagcgaugucuaacccgagcagaucucuguacaaagCUCAAGAAAGCUGUGGGAAAauauggaagaa
.((..(((((((((((((((.((((((((((.(((.((((..((((..((.(((.(.((((...(((((......)))))))))...).))))).))))..)))).))).)))))))))))))))))))))))))..)).

Structure

u  cg               U          A   a    uc    ga  u   a --a    gaa     gu 
 uc  ucauauuUUUCCACA GCUUUCUUGA CUu gugc  aggu  ug cuc g   agac   aucgu  u
 ||  ||||||||||||||| |||||||||| ||| ||||  ||||  || ||| |   ||||   |||||   
 ag  gguauaAAAGGGUGU CGAAAGAACU gaa caug  ucua  ac gag c   ucug   uagcg  a
a  aa               -          C   a    uc    -g  -   c caa    ---     aa 

Annotation confidence High

Genome context

MA_65324: 5826-5965 [-]

Mature pab-miR396u-5p

• Accession: MIMAT0044765
• Description: Picea abies pab-miR396u-5p mature miRNA
• Sequence: 13 - UUUCCACAUGCUUUCUUGAACU - 34
• Evidence: experimental ; Illumina [1]

Mature pab-miR396u-3p

• Accession: MIMAT0057514
• Description: Picea abies pab-miR396u-3p mature miRNA
• Sequence: 110 - CUCAAGAAAGCUGUGGGAAA - 129
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918