Stem-loop pab-MIR397a

Accession

MI0036668

Description

Picea abies pab-MIR397a precursor miRNA

Literature search

1 open access papers mention pab-MIR397a
(2 sentences)

Sequence

18397 reads, 1681.0 reads per million, 91 experiments

ggcucaggcaaccacauUAUUGAGUGCAGCGUUGACGAUGauaaauuuuuucuacaaaauauccaucuuuguagaaugauaaguauaucGUUAACUUUGCACUCUAUAAUcuguuugccaauggcu
((((..(((((.((.(((((.((((((((.((((((((((......((.(((((((((.........))))))))).))......)))))))))).)))))))).))))).)).)))))...))))

Structure

    -ca     c  c     U        C          auaaau  u         aua 
ggcu   ggcaa ca auUAU GAGUGCAG GUUGACGAUG      uu uucuacaaa   u
||||   ||||| || ||||| |||||||| ||||||||||      || |||||||||   c
ucgg   ccguu gu UAAUA CUCACGUU CAAUUGcuau      ag aagauguuu   c
    uaa     u  c     U        U          augaau  u         cua 

Annotation confidence High

Genome context

MA_10426128: 864-989 [+]

Mature pab-miR397a-5p

• Accession: MIMAT0044766
• Description: Picea abies pab-miR397a-5p mature miRNA
• Sequence: 18 - UAUUGAGUGCAGCGUUGACGAUG - 40
• Evidence: experimental ; Illumina [1]

Mature pab-miR397a-3p

• Accession: MIMAT0057515
• Description: Picea abies pab-miR397a-3p mature miRNA
• Sequence: 90 - GUUAACUUUGCACUCUAUAAU - 110
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918