Stem-loop pab-MIR397c

Accession

MI0036669

Description

Picea abies pab-MIR397c precursor miRNA

Literature search

1 open access papers mention pab-MIR397c
(2 sentences)

Sequence

18413 reads, 1686.0 reads per million, 91 experiments

ggcccaggcaaccacauUAUUGAGUGCAGCGUUGACGAUGauaaaaauuuucuacaaaauaucuaucuuuguagaaugauaaguauaucGUUAACUUUGCACUCUAUAAUcuguuugccaauggcu
((((..(((((.((.(((((.((((((((.((((((((((.........(((((((((.........))))))))).........)))))))))).)))))))).))))).)).)))))...))))

Structure

    -ca     c  c     U        C          auaaaaauu         aua 
ggcc   ggcaa ca auUAU GAGUGCAG GUUGACGAUG         uucuacaaa   u
||||   ||||| || ||||| |||||||| ||||||||||         |||||||||   c
ucgg   ccguu gu UAAUA CUCACGUU CAAUUGcuau         aagauguuu   u
    uaa     u  c     U        U          augaauagu         cua 

Annotation confidence High

Genome context

MA_137946: 1338-1463 [-]

Mature pab-miR397c-5p

• Accession: MIMAT0044767
• Description: Picea abies pab-miR397c-5p mature miRNA
• Sequence: 18 - UAUUGAGUGCAGCGUUGACGAUG - 40
• Evidence: experimental ; Illumina [1]

Mature pab-miR397c-3p

• Accession: MIMAT0057516
• Description: Picea abies pab-miR397c-3p mature miRNA
• Sequence: 90 - GUUAACUUUGCACUCUAUAAU - 110
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918