Stem-loop pab-MIR397e

Accession

MI0036671

Description

Picea abies pab-MIR397e precursor miRNA

Literature search

1 open access papers mention pab-MIR397e
(2 sentences)

Sequence

28154 reads, 2673.0 reads per million, 91 experiments

agcccgggcaaccacauUAUUGAGUGCAGCGUUGACGGUaaucaaaauuccccacgaaauaucuaucuauugggacaugcuauguauaucGUUAACUCUGCACUCUAUAAUauguuugccaauggcu
((((..(((((.((.(((((.((((((((.((((((((((..((..((..((((.((........))...))))..))....))..)))))))))).)))))))).))))).)).)))))...))))

Structure

    -cg     c  c     U        C          au  --aa  uc    --c  aau 
agcc   ggcaa ca auUAU GAGUGCAG GUUGACGGUa  ca    au  ccca   ga   a
||||   ||||| || ||||| |||||||| ||||||||||  ||    ||  ||||   ||    
ucgg   ccguu gu UAAUA CUCACGUC CAAUUGcuau  gu    ua  gggu   cu   u
    uaa     u  a     U        U          au  aucg  ca    uau  auc 

Annotation confidence High

Genome context

MA_44194: 15330-15456 [-]

Mature pab-miR397e-5p

• Accession: MIMAT0044769
• Description: Picea abies pab-miR397e-5p mature miRNA
• Sequence: 18 - UAUUGAGUGCAGCGUUGACGGU - 39
• Evidence: experimental ; Illumina [1]

Mature pab-miR397e-3p

• Accession: MIMAT0057518
• Description: Picea abies pab-miR397e-3p mature miRNA
• Sequence: 91 - GUUAACUCUGCACUCUAUAAU - 111
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918