Stem-loop pab-MIR397f

Accession

MI0036672

Description

Picea abies pab-MIR397f precursor miRNA

Literature search

1 open access papers mention pab-MIR397f
(2 sentences)

Sequence

12699 reads, 1355.0 reads per million, 93 experiments

aagcagcccaggaaaccacauUAUUGAGUGCAGCGUUGACGauaauaaaaauugcccacaaaguauuucucucucucucucuguggaauucuguguauaucguuAACUUUGCAUUCGAUAAUCUGcuugcccauggcuccuu
(((.((((..((.((.((.((((((((((((((.(((((((((((((........(((((.((...............)).))))).......))).)))))))))).)))))))))))))).)).))..))..)))).)))

Structure

   c    ca  -a  c  c              C          -   aaaauugc     a  uauuuc 
aag agcc  gg  aa ca auUAUUGAGUGCAG GUUGACGaua aua        ccaca ag      u
||| ||||  ||  || || |||||||||||||| |||||||||| |||        ||||| ||      c
uuc ucgg  cc  uu GU UAAUAGCUUACGUU CAAuugcuau ugu        ggugu uc      u
   c    ua  cg  c  C              U          a   -gucuuaa     c  ucucuc 

Annotation confidence Medium

Genome context

MA_46203: 20319-20460 [+]

Mature pab-miR397f-5p

• Accession: MIMAT0044770
• Description: Picea abies pab-miR397f-5p mature miRNA
• Sequence: 22 - UAUUGAGUGCAGCGUUGACG - 41
• Evidence: experimental ; Illumina [1]

Mature pab-miR397f-3p

• Accession: MIMAT0057519
• Description: Picea abies pab-miR397f-3p mature miRNA
• Sequence: 105 - AACUUUGCAUUCGAUAAUCUG - 125
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918