Stem-loop pab-MIR397g

Accession

MI0036673

Description

Picea abies pab-MIR397g precursor miRNA

Literature search

1 open access papers mention pab-MIR397g
(2 sentences)

Sequence

17964 reads, 1630.0 reads per million, 92 experiments

ggcccaggcaaccacauUAUUGAGUGCAGCGUUGACGAUGauaaaaauuuucuacaaaauaucuaucuuuguagaaugauaaguauauCGUAACUUUGCACUCUCUAAUcuguuugccaauggcu
((((..(((((.((.((((..((((((((.((((.(((((.........(((((((((.........))))))))).........))))))))).))))))))..)))).)).)))))...))))

Structure

    -ca     c  c    UU        C    A     auaaaaauu         aua 
ggcc   ggcaa ca auUA  GAGUGCAG GUUG CGAUG         uucuacaaa   u
||||   ||||| || ||||  |||||||| |||| |||||         |||||||||   c
ucgg   ccguu gu UAAU  CUCACGUU CAAU GCuau         aagauguuu   u
    uaa     u  c    CU        U    -     augaauagu         cua 

Annotation confidence High

Genome context

MA_75500: 2559-2683 [+]

Mature pab-miR397g-5p

• Accession: MIMAT0044771
• Description: Picea abies pab-miR397g-5p mature miRNA
• Sequence: 18 - UAUUGAGUGCAGCGUUGACGAUG - 40
• Evidence: experimental ; Illumina [1]

Mature pab-miR397g-3p

• Accession: MIMAT0057520
• Description: Picea abies pab-miR397g-3p mature miRNA
• Sequence: 89 - CGUAACUUUGCACUCUCUAAU - 109
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918