Stem-loop pab-MIR397h

Accession

MI0036674

Description

Picea abies pab-MIR397h precursor miRNA

Literature search

1 open access papers mention pab-MIR397h
(2 sentences)

Sequence

17944 reads, 1615.0 reads per million, 92 experiments

ggcaaccacauUAUUGAGUGCAGCGUUGACGAUGauaaauguuuucuacaaaauauccaucuuuguagaaugauaaguauaaaGUUAACUUUGCACUCUAUAAUauguuugcc
(((((.((.(((((.((((((((.((((((....(((..(((((((((((((.........))))))))).))))..)))...)))))).)))))))).))))).)).)))))

Structure

     c  c     U        C      GAUG   aa    -         aua 
ggcaa ca auUAU GAGUGCAG GUUGAC    aua  uguu uucuacaaa   u
||||| || ||||| |||||||| ||||||    |||  |||| |||||||||   c
ccguu gu UAAUA CUCACGUU CAAUUG    uau  auag aagauguuu   c
     u  a     U        U      -aaa   ga    u         cua 

Annotation confidence High

Genome context

MA_9501210: 2974-3086 [-]

Mature pab-miR397h-5p

• Accession: MIMAT0044772
• Description: Picea abies pab-miR397h-5p mature miRNA
• Sequence: 12 - UAUUGAGUGCAGCGUUGACGAUG - 34
• Evidence: experimental ; Illumina [1]

Mature pab-miR397h-3p

• Accession: MIMAT0057521
• Description: Picea abies pab-miR397h-3p mature miRNA
• Sequence: 84 - GUUAACUUUGCACUCUAUAAU - 104
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918