Stem-loop pab-MIR397i

Accession

MI0036675

Description

Picea abies pab-MIR397i precursor miRNA

Literature search

1 open access papers mention pab-MIR397i
(2 sentences)

Sequence

31301 reads, 2969.0 reads per million, 91 experiments

gcccaggcaaccacauUAUUGAGUGCAGCGUUGACGGUaaucaaaauugcccacaaaauaucuaucuuagugggaaaugcucuguauaucGUUAACUCUGCACUCUGUAAUauguuugccaauggc
(((..(((((.((.(((((.((((((((.((((((((((..((..(((.(((((...............))))).)))....))..)))))))))).)))))))).))))).)).)))))...)))

Structure

   -ca     c  c     U        C          au  --aa   g     aaaaua 
gcc   ggcaa ca auUAU GAGUGCAG GUUGACGGUa  ca    auu cccac      u
|||   ||||| || ||||| |||||||| ||||||||||  ||    ||| |||||      c
cgg   ccguu gu UAAUG CUCACGUC CAAUUGcuau  gu    uaa gggug      u
   uaa     u  a     U        U          au  cucg   a     auucua 

Annotation confidence High

Genome context

MA_958147: 3599-3724 [+]

Mature pab-miR397i-5p

• Accession: MIMAT0044773
• Description: Picea abies pab-miR397i-5p mature miRNA
• Sequence: 17 - UAUUGAGUGCAGCGUUGACGGU - 38
• Evidence: experimental ; Illumina [1]

Mature pab-miR397i-3p

• Accession: MIMAT0057522
• Description: Picea abies pab-miR397i-3p mature miRNA
• Sequence: 91 - GUUAACUCUGCACUCUGUAAU - 111
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918