Stem-loop pab-MIR397j

Accession

MI0036676

Description

Picea abies pab-MIR397j precursor miRNA

Literature search

1 open access papers mention pab-MIR397j
(2 sentences)

Sequence

530 reads, 55.0 reads per million, 74 experiments

gauaaacgcUCAUCAUUGAGUGCAGCAUUGaccccuugaaccgaacaacaauuugacaggucgAUGCUGCAUUCAACGAUAAGCuuuuauu
((((((.(((.(((.((((((((((((((((((..(((((...........)))))..)))))))))))))))))).))).))).))))))

Structure

      c   C   A                  cc     ccga 
gauaaa gcU AUC UUGAGUGCAGCAUUGacc  uugaa    a
|||||| ||| ||| ||||||||||||||||||  |||||    c
uuauuu CGA UAG AACUUACGUCGUAgcugg  aguuu    a
      u   A   C                  ac     aaca 

Annotation confidence High

Genome context

MA_914971: 4060-4150 [+]

Mature pab-miR397j-5p

• Accession: MIMAT0044774
• Description: Picea abies pab-miR397j-5p mature miRNA
• Sequence: 10 - UCAUCAUUGAGUGCAGCAUUG - 30
• Evidence: experimental ; Illumina [1]

Mature pab-miR397j-3p

• Accession: MIMAT0057523
• Description: Picea abies pab-miR397j-3p mature miRNA
• Sequence: 64 - AUGCUGCAUUCAACGAUAAGC - 84
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918