Stem-loop pab-MIR397k

Accession

MI0036677

Description

Picea abies pab-MIR397k precursor miRNA

Literature search

1 open access papers mention pab-MIR397k
(2 sentences)

Sequence

600 reads, 65.0 reads per million, 79 experiments

guguugagauaaaugcUCAUCAUUGAGUGCAGCAUUGacccuuugaaccaaacaacaauuugaugggucgaugcugcauucaacgAUAAGCUUUUAUUAAUGGCGAC
.(((((.((((((.(((.(((.(((((((((((((((((((.(((((...........))))).))))))))))))))))))).))).))).))))))..)))))..

Structure

-g     -a      u   C   A                   u     ccaa 
  uguug  gauaaa gcU AUC UUGAGUGCAGCAUUGaccc uugaa    a
  |||||  |||||| ||| ||| ||||||||||||||||||| |||||    c
  GCGGU  UUAUUU CGA UAg aacuuacgucguagcuggg aguuu    a
CA     AA      U   A   c                   u     aaca 

Annotation confidence Not enough data

Genome context

MA_10432988: 128-234 [+]

Mature pab-miR397k-5p

• Accession: MIMAT0044775
• Description: Picea abies pab-miR397k-5p mature miRNA
• Sequence: 17 - UCAUCAUUGAGUGCAGCAUUG - 37
• Evidence: experimental ; Illumina [1]

Mature pab-miR397k-3p

• Accession: MIMAT0057524
• Description: Picea abies pab-miR397k-3p mature miRNA
• Sequence: 86 - AUAAGCUUUUAUUAAUGGCGAC - 107
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918