Stem-loop pab-MIR397l

Accession

MI0036678

Description

Picea abies pab-MIR397l precursor miRNA

Literature search

1 open access papers mention pab-MIR397l
(2 sentences)

Sequence

545 reads, 56.0 reads per million, 74 experiments

gauaaaugcUCAUCAUUGAGUGCAGCAUUGaccguuugaaccgagcaacaauuugaugggucgAUGCUGCAUUCAACGAUAAGCuuuuauc
((((((.(((.(((.((((((((((((((((((..(((((...........)))))..)))))))))))))))))).))).))).))))))

Structure

      u   C   A                  gu     ccga 
gauaaa gcU AUC UUGAGUGCAGCAUUGacc  uugaa    g
|||||| ||| ||| ||||||||||||||||||  |||||    c
cuauuu CGA UAG AACUUACGUCGUAgcugg  aguuu    a
      u   A   C                  gu     aaca 

Annotation confidence High

Genome context

MA_20374: 60642-60732 [-]

Mature pab-miR397l-5p

• Accession: MIMAT0044776
• Description: Picea abies pab-miR397l-5p mature miRNA
• Sequence: 10 - UCAUCAUUGAGUGCAGCAUUG - 30
• Evidence: experimental ; Illumina [1]

Mature pab-miR397l-3p

• Accession: MIMAT0057525
• Description: Picea abies pab-miR397l-3p mature miRNA
• Sequence: 64 - AUGCUGCAUUCAACGAUAAGC - 84
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918