Stem-loop pab-MIR397m

Accession

MI0036679

Description

Picea abies pab-MIR397m precursor miRNA

Literature search

1 open access papers mention pab-MIR397m
(2 sentences)

Sequence

1879 reads, 283.0 reads per million, 73 experiments

cgugcugagauaagugcUCAUCAUUGAGAGCAGCAUugaccuuuugaacugaacaacaauuccaugggucgaugcugcauucaacgAUAAGCUUUUAUUAAUGGCGAg
..(((((.((((((.(((.(((.(((((.(((((((((((((...(((.((.....)).)))...))))))))))))).))))).))).))).))))))..)))))..

Structure

cg     -a      u   C   A     A             uuu   c  a 
  ugcug  gauaag gcU AUC UUGAG GCAGCAUugaccu   gaa ug a
  |||||  |||||| ||| ||| ||||| |||||||||||||   ||| || c
  GCGGU  UUAUUU CGA UAg aacuu cgucguagcuggg   cuu ac a
gA     AA      U   A   c     a             uac   a  a 

Annotation confidence Not enough data

Genome context

MA_281381: 3774-3881 [-]

Mature pab-miR397m-5p

• Accession: MIMAT0044777
• Description: Picea abies pab-miR397m-5p mature miRNA
• Sequence: 18 - UCAUCAUUGAGAGCAGCAU - 36
• Evidence: experimental ; Illumina [1]

Mature pab-miR397m-3p

• Accession: MIMAT0057526
• Description: Picea abies pab-miR397m-3p mature miRNA
• Sequence: 87 - AUAAGCUUUUAUUAAUGGCGA - 107
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918