Stem-loop pab-MIR397n

Accession

MI0036680

Description

Picea abies pab-MIR397n precursor miRNA

Literature search

1 open access papers mention pab-MIR397n
(2 sentences)

Sequence

1864 reads, 298.0 reads per million, 68 experiments

gauaaaugcUCAUCAUUGAGAGCAGCAUUGacuguuggaacugaacaacaguucgacggaucgAUGCUGCAUUCAACGAUAAGCuuuuauu
((((((.(((.(((.(((((.((((((((((((((((.(((((.....))))))))))).)))))))))).))))).))).))).))))))

Structure

      u   C   A     A          -      g     a 
gauaaa gcU AUC UUGAG GCAGCAUUGa cuguug aacug a
|||||| ||| ||| ||||| |||||||||| |||||| ||||| c
uuauuu CGA UAG AACUU CGUCGUAgcu ggcagc uugac a
      u   A   C     A          a      -     a 

Annotation confidence High

Genome context

MA_4077889: 84-174 [+]

Mature pab-miR397n-5p

• Accession: MIMAT0044778
• Description: Picea abies pab-miR397n-5p mature miRNA
• Sequence: 10 - UCAUCAUUGAGAGCAGCAUUG - 30
• Evidence: experimental ; Illumina [1]

Mature pab-miR397n-3p

• Accession: MIMAT0057527
• Description: Picea abies pab-miR397n-3p mature miRNA
• Sequence: 64 - AUGCUGCAUUCAACGAUAAGC - 84
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918