Stem-loop pab-MIR397q

Accession

MI0036683

Description

Picea abies pab-MIR397q precursor miRNA

Literature search

1 open access papers mention pab-MIR397q
(2 sentences)

Sequence

2623 reads, 286.0 reads per million, 79 experiments

gauaaaugcUCAUCAUUGAGAGCAGCAUUGagcguuugaacugaacaacaauucgacgggucgAUGCUGCAUUCAAUGAUAAGCUuuuauu
((((((.(((.(((((((((.((((((((((.(..(((((.((.....)).)))))..).)))))))))).))))))))).))).))))))

Structure

      u   C         A          g gu     c  a 
gauaaa gcU AUCAUUGAG GCAGCAUUGa c  uugaa ug a
|||||| ||| ||||||||| |||||||||| |  ||||| || c
uuauuu CGA UAGUAACUU CGUCGUAgcu g  agcuu ac a
      U   A         A          g gc     a  a 

Annotation confidence High

Genome context

MA_26967: 13372-13462 [+]

Mature pab-miR397q-5p

• Accession: MIMAT0044781
• Description: Picea abies pab-miR397q-5p mature miRNA
• Sequence: 10 - UCAUCAUUGAGAGCAGCAUUG - 30
• Evidence: experimental ; Illumina [1]

Mature pab-miR397q-3p

• Accession: MIMAT0057530
• Description: Picea abies pab-miR397q-3p mature miRNA
• Sequence: 64 - AUGCUGCAUUCAAUGAUAAGCU - 85
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918