Stem-loop pab-MIR397r

Accession

MI0036684

Description

Picea abies pab-MIR397r precursor miRNA

Literature search

1 open access papers mention pab-MIR397r
(2 sentences)

Sequence

1890 reads, 290.0 reads per million, 69 experiments

gauaaaugcUCAUCAUUGAGAGCAGCAUUGaccguuugaacugaacaacaguucgaccggucgAUGCUGCAUUCAAUGAUAAGCUuuuauu
((((((.(((.(((((((((.(((((((((((((.((((((((.....)))))))).))))))))))))).))))))))).))).))))))

Structure

      u   C         A             u        a 
gauaaa gcU AUCAUUGAG GCAGCAUUGaccg uugaacug a
|||||| ||| ||||||||| ||||||||||||| |||||||| c
uuauuu CGA UAGUAACUU CGUCGUAgcuggc agcuugac a
      U   A         A             c        a 

Annotation confidence High

Genome context

MA_671913: 692-782 [-]

Mature pab-miR397r-5p

• Accession: MIMAT0044782
• Description: Picea abies pab-miR397r-5p mature miRNA
• Sequence: 10 - UCAUCAUUGAGAGCAGCAUUG - 30
• Evidence: experimental ; Illumina [1]

Mature pab-miR397r-3p

• Accession: MIMAT0057531
• Description: Picea abies pab-miR397r-3p mature miRNA
• Sequence: 64 - AUGCUGCAUUCAAUGAUAAGCU - 85
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918