Stem-loop pab-MIR397u

Accession

MI0036687

Description

Picea abies pab-MIR397u precursor miRNA

Literature search

1 open access papers mention pab-MIR397u
(2 sentences)

Sequence

2500 reads, 257.0 reads per million, 81 experiments

ucgugcucagauaaaugaUCAUCAUUGAGAGCAGCAUCGacagucugaacugaacaacaauucgacgggucgAUGCUGCACUCAACGAUAAGCuuuuauuaagugcga
(((((((..((((((.(...(((.(((((.(((((((((((.(((.(((.((.....)).))))))..))))))))))).))))).)))...).)))))).)))))))

Structure

       ca      u aUC   A     A           -a   u   c  a 
ucgugcu  gauaaa g   AUC UUGAG GCAGCAUCGac  guc gaa ug a
|||||||  |||||| |   ||| ||||| |||||||||||  ||| ||| || c
agcguga  uuauuu C   UAG AACUC CGUCGUAgcug  cag cuu ac a
       -a      u GAA   C     A           gg   -   a  a 

Annotation confidence High

Genome context

MA_22537: 3556-3663 [+]

Mature pab-miR397u-5p

• Accession: MIMAT0044785
• Description: Picea abies pab-miR397u-5p mature miRNA
• Sequence: 19 - UCAUCAUUGAGAGCAGCAUCG - 39
• Evidence: experimental ; Illumina [1]

Mature pab-miR397u-3p

• Accession: MIMAT0057533
• Description: Picea abies pab-miR397u-3p mature miRNA
• Sequence: 73 - AUGCUGCACUCAACGAUAAGC - 93
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918