Stem-loop pab-MIR398a

Accession

MI0036688

Description

Picea abies pab-MIR398a precursor miRNA

Sequence

937 reads, 85.0 reads per million, 50 experiments

gaagaagacggccugaaaauccAACAGGGGUAAUACUGGGAACAcaugcccugagacaucuccacguuaucuccauaaucuuuuuaaauuuugaaacccucugcuuccauaucuuucacuuugcacuugucaauggcggaugcugugggugCGUGUUCUCAGGUCACCCCUGuaggaaaaucugcuguucguuc
......((((((..((...(((.((((((((....((((((((((.(((((..((.((((((((..........................((((.......(((..................)))....))))))).)))))))..))))).))))))))))...)))))))).)))...)).)))))).....

Structure

gaagaa      cu  aaa   A        AAUA          a     ug  a     -   cguuaucuccauaaucuuuuuaaauu    aacccuc   uuccauau 
      gacggc  ga   ucc ACAGGGGU    CUGGGAACAc ugccc  ag caucu cca                          uuga       ugc        c
      ||||||  ||   ||| ||||||||    |||||||||| |||||  || ||||| |||                          ||||       |||         
      uugucg  cu   agg uGUCCCCA    GACUCUUGUG guggg  uc guagg ggu                          aacu       acg        u
-cuugc      -u  aaa   a        -CUG          C     ug  -     c   --------------------------    ---guuc   uuucacuu 

Annotation confidence Medium

Genome context

MA_136386: 9456-9649 [-]

Mature pab-miR398a-5p

• Accession: MIMAT0057534
• Description: Picea abies pab-miR398a-5p mature miRNA
• Sequence: 23 - AACAGGGGUAAUACUGGGAACA - 44
• Evidence: experimental ; unknown

Mature pab-miR398a-3p

• Accession: MIMAT0044786
• Description: Picea abies pab-miR398a-3p mature miRNA
• Sequence: 152 - CGUGUUCUCAGGUCACCCCUG - 172
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918