Stem-loop pab-MIR399a

Accession

MI0036690

Description

Picea abies pab-MIR399a precursor miRNA

Literature search

1 open access papers mention pab-MIR399a
(1 sentences)

Sequence

736 reads, 27.0 reads per million, 58 experiments

uguggugaccauuugcgGGGUAACUCUCCAUUGGCGGGcaggaguaagggcuuauaguaagaaugcuacacccaucaucaugaaugauuaugguggugguagucuauuacauaucCGCCAAAGGAGAGUUGCUCAGcgauugcuccuuaca
(((((.((.((.((((.((((((((((((.((((((((.....(((((((((..(((((....)))))...((((((((((((....)))))))))))).))))).))))...)))))))).)))))))))))).)))).)).)).)))))

Structure

     u  c  u    g            A        cagga    -     uauaguaagaaugcuacac            a 
ugugg ga ca uugc GGGUAACUCUCC UUGGCGGG     guaa gggcu                   ccaucaucauga u
||||| || || |||| |||||||||||| ||||||||     |||| |||||                   ||||||||||||  
acauu cu gu agcG CUCGUUGAGAGG AACCGCcu     cauu ucuga                   gguggugguauu g
     c  c  u    A            A        --aua    a     ------------------u            a 

Annotation confidence High

Genome context

MA_628614: 3887-4037 [+]

Mature pab-miR399a-5p

• Accession: MIMAT0057536
• Description: Picea abies pab-miR399a-5p mature miRNA
• Sequence: 18 - GGGUAACUCUCCAUUGGCGGG - 38
• Evidence: experimental ; unknown

Mature pab-miR399a-3p

• Accession: MIMAT0044788
• Description: Picea abies pab-miR399a-3p mature miRNA
• Sequence: 116 - CGCCAAAGGAGAGUUGCUCAG - 136
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918