Stem-loop pab-MIR399b

Accession

MI0036691

Description

Picea abies pab-MIR399b precursor miRNA

Literature search

1 open access papers mention pab-MIR399b
(1 sentences)

Sequence

1209 reads, 70.0 reads per million, 57 experiments

uguggcgaccauuugcgGUGCAACUCUCCUUGGGCUGGcaggaauacggacuuauaauaagaacgccacucuacccauggcaucaucaugaaugauuauuggaggcggcuagucuauuccacaucCGCCAAAGGAGAGUUGCCCUGcgauugcucuucaca
(((((.((.((.((((((.((((((((((((.(((.((..(((((..(((((............(((.(.((.((.(((..(((((.....)))))))).))))).))).))))))))))....))))).)))))))))))).)))))).)).)).)))))

Structure

     c  c  u      U            G   U  --ca     ac     uauaauaagaac   a u  a  c   gc     c 
ugugg ga ca uugcgG GCAACUCUCCUU GGC GG    ggaau  ggacu            gcc c cu cc aug  aucau a
||||| || || |||||| |||||||||||| ||| ||    |||||  |||||            ||| | || || |||  ||||| u
acacu cu gu agcGUC CGUUGAGAGGAA CCG Cc    ccuua  ucuga            cgg g ga gg uau  uagua g
     u  c  u      C            A   -  uaca     --     -----------u   c -  -  u   --     a 

Annotation confidence High

Genome context

MA_36528: 10441-10601 [-]

Mature pab-miR399b-5p

• Accession: MIMAT0057537
• Description: Picea abies pab-miR399b-5p mature miRNA
• Sequence: 18 - GUGCAACUCUCCUUGGGCUGG - 38
• Evidence: experimental ; unknown

Mature pab-miR399b-3p

• Accession: MIMAT0044789
• Description: Picea abies pab-miR399b-3p mature miRNA
• Sequence: 126 - CGCCAAAGGAGAGUUGCCCUG - 146
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918