Stem-loop pab-MIR399e

Accession

MI0036694

Description

Picea abies pab-MIR399e precursor miRNA

Literature search

1 open access papers mention pab-MIR399e
(1 sentences)

Sequence

aguccauuccacaucUGCCAAAGGAGAGUUGCUCUGcaaaaucuccucacauugucguguucgcugcauggccgugaaaaccagcuacgacuaauuggagaaaagcgcaacgguauuuuuugcacucauuuuuguuaggguuuggauugguuuuuguuaggguuuuuuauuuguuaggguuuggauugguuuuuguuaggguuuuuuuguuuguuaggguuuggauuggcu
((.(((.((((.((((..((((.(((((..((((((((((......((((...(((((((.....))))))).)))).(((((((((...(((((....(((((((.((((((.(((.((((.((((..........)))).))))..)))..))))).).)))))))....)))))....))).)))))))))).)))))).))))).))))...)))).)))).)))))

Structure

  u   u    c    -GC    G     UU      -    aucuccucacauugucguguucgcugcauggccgugaa      -   -cga     ugga       g -     -u   -u    c    auuu 
ag cca ucca aucU   CAAA GAGAG  GCUCUG caaa                                      aaccag cua    cuaau    gaaaagc c aacgg  auu  uuug acuc    u
|| ||| |||| ||||   |||| |||||  |||||| ||||                                      |||||| |||    |||||    ||||||| | |||||  |||  |||| ||||     
uc ggu aggu uggg   guuu uuuuu  ugggau guuu                                      uugguu ggu    gauug    uuuuuug g uuguu  ugg  aggu uggg    u
  -   u    u    auu    g     -u      u    --------------------------------------      a   uugg     uuua       g a     uu   uu    u    auug 

Annotation confidence Not enough data

Genome context

MA_33407: 2275-2505 [+]

Mature pab-miR399e

• Accession: MIMAT0044792
• Description: Picea abies pab-miR399e mature miRNA
• Sequence: 16 - UGCCAAAGGAGAGUUGCUCUG - 36
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918