Stem-loop pab-MIR399h

Accession

MI0036697

Description

Picea abies pab-MIR399h precursor miRNA

Literature search

1 open access papers mention pab-MIR399h
(1 sentences)

Sequence

gauuuguacagggaaguUACAGGCAGCUCUCCUUUGGCaggagggaggaugauacuaugauucaugauugaagccugcgcauuaguuauacaauacauauguauauuuguucacaauagagaucguagagcauuuuaaauuuauguuguuacauauaguagugaauugguccgauguccagcuuuguccaguaauuagacugccguuccugcaugccaaaggagaauuguccugcgacugcacuguacaaugc
...((((((((...((((.(((((((.(((((((((((((.(((((((...(((((((((((.((((((((.((....)).))))))))..))).)))).))))........((((..((.((((..((.((.((((....(((((....)))))......)))).)).)))))).)).....)))).((((......)))))).))))).).)))))))))))).))).)))).))))...))))))))...

Structure

gau        gga    A    -   C            - g     -  augauacuaugauucaugauugaagccugcgcauuaguuauacaauacauauguauauuuguuc    ---ua  g    ua  g  u    --aauu     u 
   uuguacag   aguU CAGG CAG UCUCCUUUGGCa g aggga gg                                                                acaa     ga aucg  ga ca uuua      uaugu g
   ||||||||   |||| |||| ||| |||||||||||| | ||||| ||                                                                ||||     || ||||  || || ||||      |||||  
   aacauguc   ucag gucc guu agaggaaaccgu c uccuu cc                                                                uguu     cu uagc  cu gu aagu      auaca u
cgu        acg    c    u   a            a g     g  -------------------------------------------------gucagauuaaugacc    ucgac  g    --  g  u    gaugau     u 

Annotation confidence Not enough data

Genome context

MA_214874: 2889-3141 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pab-MIR399h

Mature pab-miR399h

• Accession: MIMAT0044795
• Description: Picea abies pab-miR399h mature miRNA
• Sequence: 18 - UACAGGCAGCUCUCCUUUGGC - 38
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918