Stem-loop pab-MIR472

Accession

MI0036698

Description

Picea abies pab-MIR472 precursor miRNA

Literature search

1 open access papers mention pab-MIR472
(1 sentences)

Sequence

725 reads, 39.0 reads per million, 36 experiments

agacaucagauaCCUUGUAGAAGUUGUACACGGauuugagcaaaguggucuuuccgaccccggccauuccauacaccccaaUUGUGCGAGGUUCUGAAGCCU
.....(((((.((((((((.((..((((...(((..((.((...(.((((.....)))))..)))).))).))))......)).))))))))))))).....

Structure

agaca     u        G  ----GU    CAC   uu  a  aaa u    u 
     ucaga aCCUUGUA AA      UGUA   GGa  ug gc   g gguc u
     ||||| |||||||| ||      ||||   |||  || ||   | |||| u
     AGUCU UGGAGCGU UU      acau   ccu  ac cg   c ccag c
UCCGA     -        G  aacccc    --a   -u  -  -gc -    c 

Annotation confidence Low

Genome context

MA_3750148: 88-189 [+]

Mature pab-miR472-5p

• Accession: MIMAT0057539
• Description: Picea abies pab-miR472-5p mature miRNA
• Sequence: 13 - CCUUGUAGAAGUUGUACACGG - 33
• Evidence: experimental ; unknown

Mature pab-miR472-3p

• Accession: MIMAT0044796
• Description: Picea abies pab-miR472-3p mature miRNA
• Sequence: 82 - UUGUGCGAGGUUCUGAAGCCU - 102
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918