Stem-loop pab-MIR1311b

Accession

MI0036700

Description

Picea abies pab-MIR1311b precursor miRNA

Literature search

1 open access papers mention pab-MIR1311b
(3 sentences)

Sequence

164862 reads, 7675.0 reads per million, 102 experiments

ugcuuaugggcuugguaggauuaggCGCACUGGCAUAACUCUGACCauaguuuauggUCAGAGUUUUGCCAGUUCCGCCcauuccuauugugccuuuaagua
((((((.((((..(((((((...((((.(((((((.(((((((((((((...))))))))))))).)))))))..))))...)))))))..)))).))))))

Structure

      u    uu       uua    -C       U             g 
ugcuua gggc  gguagga   ggCG  ACUGGCA AACUCUGACCaua  
|||||| ||||  |||||||   ||||  ||||||| ||||||||||||| u
augaau uccg  uuauccu   CCGC  UGACCGU UUGAGACUgguau  
      u    ug       uac    CU       U             u 

Annotation confidence High

Genome context

MA_9899228: 4382-4483 [+]

Mature pab-miR1311b-5p

• Accession: MIMAT0044798
• Description: Picea abies pab-miR1311b-5p mature miRNA
• Sequence: 26 - CGCACUGGCAUAACUCUGACC - 46
• Evidence: experimental ; Illumina [1]

Mature pab-miR1311b-3p

• Accession: MIMAT0057541
• Description: Picea abies pab-miR1311b-3p mature miRNA
• Sequence: 58 - UCAGAGUUUUGCCAGUUCCGCC - 79
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918