Stem-loop pab-MIR1312b

Accession

MI0036702

Description

Picea abies pab-MIR1312b precursor miRNA

Literature search

1 open access papers mention pab-MIR1312b
(2 sentences)

Sequence

5294 reads, 522.0 reads per million, 96 experiments

ucgaaaacauccauAUUGUCAUGUCUCUUCGAAUUagguugaaucgaaacugccaacacugugaguugauucuaguuuguuucuucauaaUUUGGAGAGAAAAUGGCGACAUagauguuuucgg
.((((((((((.((.(((((((.(((((((((((((.(..(((.(.((((((.((((.......))))....))))))).)))..).)))))))))))))..))))))).)).)))))))))).

Structure

u          c  A       -G             g uu   u g      ---c    ac 
 cgaaaacauc au UUGUCAU  UCUCUUCGAAUUa g  gaa c aaacug    caac  u
 |||||||||| || |||||||  ||||||||||||| |  ||| | ||||||    ||||  g
 gcuuuuguag UA AGCGGUA  AGAGAGGUUUaau c  cuu g uuugau    guug  u
g          a  C       AA             a uu   u -      cuua    ag 

Annotation confidence High

Genome context

MA_183515: 19687-19810 [-]

Mature pab-miR1312b-5p

• Accession: MIMAT0057543
• Description: Picea abies pab-miR1312b-5p mature miRNA
• Sequence: 15 - AUUGUCAUGUCUCUUCGAAUU - 35
• Evidence: experimental ; unknown

Mature pab-miR1312b-3p

• Accession: MIMAT0044800
• Description: Picea abies pab-miR1312b-3p mature miRNA
• Sequence: 91 - UUUGGAGAGAAAAUGGCGACAU - 112
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918