Stem-loop pab-MIR1313c

Accession

MI0036706

Description

Picea abies pab-MIR1313c precursor miRNA

Literature search

1 open access papers mention pab-MIR1313c
(1 sentences)

Sequence

ucuuccugaugguauucUACCACUGAAAUUAUUGUUCGAaaugacaccugcagcucaucgagguauaccgccgugguaugguauccuucaaugcaucaccaaucuaaccuaguagcagggcugcaacacaugguaugauuuuggauccauugaggaauaauaaccaaguugcauggguggguuuauccaacaauaauuucaguggaagacuaccgucgaucuggaaga
((((((((((((((.(((.(((((((((((((((((.((.....(((((((((((.((((.(((.....))).)))).((((((.((((((((.(((...((((..(((..((.(((....))).))....)))..))))...))).)))))))).))....))))))))))..)))))......)).))))))))))))))))).))).))))))))....))))))

Structure

      ----        u   A                 C  -aauga     --      caucgagguauaccgccguggua    ----  c        c   acc    ua   --ua  a   g 
ucuucc    ugauggua ucU CCACUGAAAUUAUUGUU GA      caccu  gcagcu                       uggu    au cuucaaug auc   aauc  acc    gu gca g
||||||    |||||||| ||| ||||||||||||||||| ||      |||||  ||||||                       ||||    || |||||||| |||   ||||  |||    || |||  
agaagg    gcugccau aga ggugacuuuaauaacaa cu      guggg  cguuga                       acca    ua ggaguuac uag   uuag  ugg    ca cgu g
      ucua        c   a                 c  auuugg     ua      -----------------------    auaa  a        c   guu    ua   uaca  a   c 

Annotation confidence Not enough data

Genome context

MA_91205: 17967-18194 [+]

Mature pab-miR1313c

• Accession: MIMAT0044804
• Description: Picea abies pab-miR1313c mature miRNA
• Sequence: 18 - UACCACUGAAAUUAUUGUUCGA - 39
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918