Stem-loop pab-MIR3627a

Accession

MI0036713

Description

Picea abies pab-MIR3627a precursor miRNA

Sequence

279 reads, 38.0 reads per million, 39 experiments

gagggccugcuguguuucACGCGCAGGAGAGAUGACACUGuccuuguauaucgucuucauucauuucaguuuaagaggauaaagaguguauguauaagagcaGUGUCAUCUCUCUGCGCACGAaacagagagauucuc
(((((.((.((.((((((..((((((.((((((((((((((.(((((((((((((((.((((.(((......))).)))).)))).)).))))))))).))))))))))))))))))))..)))))).)))).)))))

Structure

     c  g  g      AC      G              c         -  -    c    a   ca 
gaggg cu cu uguuuc  GCGCAG AGAGAUGACACUGu cuuguauau cg ucuu auuc uuu  g
||||| || || ||||||  |||||| |||||||||||||| ||||||||| || |||| |||| |||   
cucuu ga ga acaaAG  CGCGUC UCUCUACUGUGacg gaauaugua gu agaa uagg gaa  u
     a  -  g      CA      -              a         u  g    a    a   uu 

Annotation confidence Medium

Genome context

MA_18075: 28801-28938 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pab-MIR3627a

Mature pab-miR3627a-5p

• Accession: MIMAT0044811
• Description: Picea abies pab-miR3627a-5p mature miRNA
• Sequence: 19 - ACGCGCAGGAGAGAUGACACUG - 40
• Evidence: experimental ; Illumina [1]

Mature pab-miR3627a-3p

• Accession: MIMAT0057549
• Description: Picea abies pab-miR3627a-3p mature miRNA
• Sequence: 103 - GUGUCAUCUCUCUGCGCACGA - 123
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918