Stem-loop pab-MIR3627b

Accession

MI0036714

Description

Picea abies pab-MIR3627b precursor miRNA

Sequence

278 reads, 36.0 reads per million, 40 experiments

gagggccugcuguguuucACGCGCAGGAGAGAUGACACUGucguuauauauccucuucauucauuucaguuuaagaugauaaagaguguauguauaagagcaGUGUCAUCUCUCUGCGCACGAaacagagagauucuc
(((((.((.((.((((((..((((((.((((((((((((((..((((((((((((((...((((((.......))))))..))))).).))))))))..))))))))))))))))))))..)))))).)))).)))))

Structure

     c  g  g      AC      G              cg        - -     cau      ca 
gaggg cu cu uguuuc  GCGCAG AGAGAUGACACUGu  uuauauau c cucuu   ucauuu  g
||||| || || ||||||  |||||| ||||||||||||||  |||||||| | |||||   ||||||  u
cucuu ga ga acaaAG  CGCGUC UCUCUACUGUGacg  aauaugua g gagaa   aguaga  u
     a  -  g      CA      -              ag        u u     -au      au 

Annotation confidence Medium

Genome context

MA_18075: 35173-35310 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pab-MIR3627b

Mature pab-miR3627b-5p

• Accession: MIMAT0044812
• Description: Picea abies pab-miR3627b-5p mature miRNA
• Sequence: 19 - ACGCGCAGGAGAGAUGACACUG - 40
• Evidence: experimental ; Illumina [1]

Mature pab-miR3627b-3p

• Accession: MIMAT0057550
• Description: Picea abies pab-miR3627b-3p mature miRNA
• Sequence: 103 - GUGUCAUCUCUCUGCGCACGA - 123
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918