Stem-loop pab-MIR3701a

Accession

MI0036720

Description

Picea abies pab-MIR3701a precursor miRNA

Literature search

1 open access papers mention pab-MIR3701a
(4 sentences)

Sequence

180427 reads, 5063.0 reads per million, 102 experiments

ugccacagaCGAAGGGUAAGCGUUGUUUGGaagaagaguuuucucuguugcagaguauagaggauuugccaaaauuaucguuaucaaaugaaaaagcuacaguagcuuuauugcaauuuguuuggcaauagccucuauguucuuugaauguaaaaacucuucucuUAAACAGUGCCCACCCUUCAUCucuggaca
..(((.(((.(((((((..(((((((((((.(((((((((((..(..(((.((((((((((((..((((((((....(((((....))))).(((((((...)))))))...........))))))))...)))))))))))).)))..)..))))))))))).)))))))))))..))))))).))).)))...

Structure

-ug   c   C       AA           a           cu ug   c            -au        auuaucguuaucaaaugaa       c 
   cca aga GAAGGGU  GCGUUGUUUGG agaagaguuuu  c  uug agaguauagagg   uugccaaa                   aaagcua  
   ||| ||| |||||||  ||||||||||| |||||||||||  |  ||| ||||||||||||   ||||||||                   ||||||| a
   ggu uCU CUUCCCA  CGUGACAAAUu ucuucucaaaa  g  agu ucuuguaucucc   aacgguuu                   uuucgau  
aca   c   A       CC           c           au ua   u            gau        --------guuuaacguua       g 

Annotation confidence High

Genome context

MA_444283: 33-227 [+]

Mature pab-miR3701a-5p

• Accession: MIMAT0057556
• Description: Picea abies pab-miR3701a-5p mature miRNA
• Sequence: 10 - CGAAGGGUAAGCGUUGUUUGG - 30
• Evidence: experimental ; unknown

Mature pab-miR3701a-3p

• Accession: MIMAT0044818
• Description: Picea abies pab-miR3701a-3p mature miRNA
• Sequence: 166 - UAAACAGUGCCCACCCUUCAUC - 187
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918