Stem-loop pab-MIR3701c

Accession

MI0036721

Description

Picea abies pab-MIR3701c precursor miRNA

Literature search

1 open access papers mention pab-MIR3701c
(4 sentences)

Sequence

284004 reads, 10904.0 reads per million, 102 experiments

gcauauggguuugccugccacaggCGAAGGGUCGGACUUGUUUAGCagaagaguuuucucuguugcaggauauggaggauuugccaaaauuuugcuaucaaaucgaaaagcuauaguagcuuuaaugcaauuuguuugguaauauccucuauauuauuugccccuaaaaauucuucucuUGAACAAUGCCCACCCUUCGUCucuggacauauucccaugc
...((((((..((..(((((.(((((((((((.((..((((((((.(((((((((((.......((((((((((((((((((((((((...((((...........(((((((...)))))))...))))....)))))))).))))))))))))..)))).....))))))))))).))))))))..)).))))))))))).))).))))..)))))).

Structure

gca      uu  cc  -   c           C  AC        C           cucuguu    --            -        -auu    uaucaaaucga       u 
   uauggg  ug  ug cca aggCGAAGGGU GG  UUGUUUAG agaagaguuuu       gcag  gauauggaggau uugccaaa    uugc           aaagcua  
   ||||||  ||  || ||| ||||||||||| ||  |||||||| |||||||||||       ||||  |||||||||||| ||||||||    ||||           ||||||| a
   guaccc  au  ac ggu uCUGCUUCCCA CC  AACAAGUu ucuucuuaaaa       cguu  uuauaucuccua aaugguuu    aacg           uuucgau  
--c      uu  --  a   c           C  GU        c           --auccc    ua            u        guuu    --------uaa       g 

Annotation confidence High

Genome context

MA_10437200: 34456-34675 [-]

Mature pab-miR3701c-5p

• Accession: MIMAT0044819
• Description: Picea abies pab-miR3701c-5p mature miRNA
• Sequence: 25 - CGAAGGGUCGGACUUGUUUAGC - 46
• Evidence: experimental ; Illumina [1]

Mature pab-miR3701c-3p

• Accession: MIMAT0057557
• Description: Picea abies pab-miR3701c-3p mature miRNA
• Sequence: 180 - UGAACAAUGCCCACCCUUCGUC - 201
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918