Stem-loop pab-MIR3701e

Accession

MI0036723

Description

Picea abies pab-MIR3701e precursor miRNA

Literature search

1 open access papers mention pab-MIR3701e
(4 sentences)

Sequence

316122 reads, 5533.0 reads per million, 101 experiments

auauggguuuuccugccacagaCGAAGGGUAGGAGUUGUUUGGUagaggaguuuucucuguugcgggauauggggguuuuccaaaauauuuuccaucaaaucaaagggcuacguuggcuuuauugcaauuuguuuggcaauauccucuauauuauucuacccuaaaaauucuucucuUAAACAAUGCCCACCCUUCAUCucuugacauauucccaugu
(((((((..(...((.((.(((.(((((((.((.(((((((((.(((((((((((....((.....((((((((((.........(((((..(((.(((((((((((((((...))))))).)))..)))))..))).))))))))))))))).....))....))))))))))).))))))))).)).))))))).)))..)).)).)..)))))))

Structure

       uu ucc  c  -c   C       A  A         U           cucu  ugcgg          uuuuccaaa     uu   -u     --   -       c 
auauggg  u   ug ca  aga GAAGGGU GG GUUGUUUGG agaggaguuuu    gu     gauauggggg         auauu  cca  caaau  caa agggcua  
|||||||  |   || ||  ||| ||||||| || ||||||||| |||||||||||    ||     ||||||||||         |||||  |||  |||||  ||| ||||||| g
uguaccc  a   ac gu  uCU CUUCCCA CC UAACAAAUu ucuucuuaaaa    ca     uuauaucucc         uauaa  ggu  guuua  guu uuucggu  
       uu --u  a  uc   A       C  G         c           aucc  ucuua          ---------     -c   uu     ac   a       u 

Annotation confidence High

Genome context

MA_299604: 764-981 [-]

Mature pab-miR3701e-5p

• Accession: MIMAT0057559
• Description: Picea abies pab-miR3701e-5p mature miRNA
• Sequence: 23 - CGAAGGGUAGGAGUUGUUUGGU - 44
• Evidence: experimental ; unknown

Mature pab-miR3701e-3p

• Accession: MIMAT0044821
• Description: Picea abies pab-miR3701e-3p mature miRNA
• Sequence: 178 - UAAACAAUGCCCACCCUUCAUC - 199
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918