Stem-loop pab-MIR3701j

Accession

MI0036724

Description

Picea abies pab-MIR3701j precursor miRNA

Literature search

1 open access papers mention pab-MIR3701j
(4 sentences)

Sequence

284862 reads, 11043.0 reads per million, 102 experiments

gaauagcauauggguuugccugccacaggCGAAGGGUCGGACUUGUUUAGCagaagaguuuucucuguugcaggauauggaggauuugccaaaauuuugcuaucaaaucgaaaagcuauaguagcuuuaaugcaauuuguuugguaauauccucuauauuauuugccccuaaaaauucuucucuUGAACAAUGCCCACCCUUCGUCucuggacauauucccaugccuuuc
(((..(((..((((..((..(((((.(((((((((((.((..((((((((.(((((((((((.......((((((((((((((((((((((((...((((...........(((((((...)))))))...))))....)))))))).))))))))))))..)))).....))))))))))).))))))))..)).))))))))))).))).))))..)))))))..)))

Structure

   ua   ua    uu  cc  -   c           C  AC        C           cucuguu    --            -        -auu    uaucaaaucga       u 
gaa  gca  uggg  ug  ug cca aggCGAAGGGU GG  UUGUUUAG agaagaguuuu       gcag  gauauggaggau uugccaaa    uugc           aaagcua  
|||  |||  ||||  ||  || ||| ||||||||||| ||  |||||||| |||||||||||       ||||  |||||||||||| ||||||||    ||||           ||||||| a
cuu  cgu  accc  au  ac ggu uCUGCUUCCCA CC  AACAAGUu ucuucuuaaaa       cguu  uuauaucuccua aaugguuu    aacg           uuucgau  
   uc   --    uu  --  a   c           C  GU        c           --auccc    ua            u        guuu    --------uaa       g 

Annotation confidence High

Genome context

MA_3037016: 60-289 [+]

Mature pab-miR3701j-5p

• Accession: MIMAT0057560
• Description: Picea abies pab-miR3701j-5p mature miRNA
• Sequence: 30 - CGAAGGGUCGGACUUGUUUAGC - 51
• Evidence: experimental ; unknown

Mature pab-miR3701j-3p

• Accession: MIMAT0044822
• Description: Picea abies pab-miR3701j-3p mature miRNA
• Sequence: 185 - UGAACAAUGCCCACCCUUCGUC - 206
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918