Stem-loop pab-MIR3701f

Accession

MI0036725

Description

Picea abies pab-MIR3701f precursor miRNA

Literature search

1 open access papers mention pab-MIR3701f
(4 sentences)

Sequence

308841 reads, 5425.0 reads per million, 99 experiments

ugccacagaCGAAGGGUCGGAGUUGUUUGGUagaagaguuuucucuguugcaggauauggaggauaugccaaaauuuugcuaucaaaucgaaaggcuacaguagcuugacugcaauuugcuugguaauauccucuaaauucuuuucccccccaaaacucuuuucuUAAACAAUGCCCACCCUUCAUCucuggaca
..(((.(((.(((((((.((.(((((((((.(((((((((((.........(((((.(((((((((((((((.(..((((..(((........(((((...))))))))..))))..)..))))).)))))))))).)))))..........))))))))))).))))))))).)).))))))).))).)))...

Structure

-ug   c   C       C  A         U           -cucuguugc     a          -     -a uu    ua   aaucgaaa     c 
   cca aga GAAGGGU GG GUUGUUUGG agaagaguuuu          aggau uggaggauau gccaa  a  uugc  uca        ggcua  
   ||| ||| ||||||| || ||||||||| |||||||||||          ||||| |||||||||| |||||  |  ||||  |||        ||||| a
   ggu uCU CUUCCCA CC UAACAAAUu uuuucucaaaa          ucuua aucuccuaua ugguu  u  aacg  agu        ucgau  
aca   c   A       C  G         c           cccccccuuu     a          a     cg uu    uc   --------     g 

Annotation confidence High

Genome context

MA_36495: 6239-6433 [+]

Mature pab-miR3701f-5p

• Accession: MIMAT0057561
• Description: Picea abies pab-miR3701f-5p mature miRNA
• Sequence: 10 - CGAAGGGUCGGAGUUGUUUGGU - 31
• Evidence: experimental ; unknown

Mature pab-miR3701f-3p

• Accession: MIMAT0044823
• Description: Picea abies pab-miR3701f-3p mature miRNA
• Sequence: 166 - UAAACAAUGCCCACCCUUCAUC - 187
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918