Stem-loop pab-MIR3701g

Accession

MI0036726

Description

Picea abies pab-MIR3701g precursor miRNA

Literature search

1 open access papers mention pab-MIR3701g
(4 sentences)

Sequence

314673 reads, 5611.0 reads per million, 101 experiments

auauggguuuuccugccacagacaaAGGGUAGGAGUUGUUUGGUAGaagaguuuucucuguugcgggauaugggggauuuuccaaaauauuugccaucaaaucaaagggcuacguuggcuuuauggcaauuuguuuggcaaugucuucuauauuauucuacccuaaaaauucuucucuUAAACAAUGCCCACCCUUCAUCucuggacauauucccaugu
(((((((..(...(((((.(((..((((((.((.(((((((((.(((((((((((....((.....((((((((((((.(((((((....(((((((........(((((((...))))))))))))))....))))).)).)))))))))))).....))....))))))))))).))))))))).)).))))))..))).))).)).)..)))))))

Structure

       uu ucc  -   c   ca      A  A         U           cucu  ugcgg            u  -     auau       caaaucaa       c 
auauggg  u   ug cca aga  aAGGGU GG GUUGUUUGG AGaagaguuuu    gu     gauaugggggau uu ccaaa    uugccau        agggcua  
|||||||  |   || ||| |||  |||||| || ||||||||| |||||||||||    ||     |||||||||||| || |||||    |||||||        ||||||| g
uguaccc  a   ac ggu uCU  UUCCCA CC UAACAAAUu ucuucuuaaaa    ca     uuauaucuucug aa gguuu    aacggua        uuucggu  
       uu --u  a   c   AC      C  G         c           aucc  ucuua            u  c     guuu       --------       u 

Annotation confidence Low

Genome context

MA_4542805: 28-246 [+]

Mature pab-miR3701g-5p

• Accession: MIMAT0057562
• Description: Picea abies pab-miR3701g-5p mature miRNA
• Sequence: 26 - AGGGUAGGAGUUGUUUGGUAG - 46
• Evidence: experimental ; unknown

Mature pab-miR3701g-3p

• Accession: MIMAT0044824
• Description: Picea abies pab-miR3701g-3p mature miRNA
• Sequence: 179 - UAAACAAUGCCCACCCUUCAUC - 200
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918