Stem-loop pab-MIR3701h

Accession

MI0036727

Description

Picea abies pab-MIR3701h precursor miRNA

Literature search

1 open access papers mention pab-MIR3701h
(4 sentences)

Sequence

283195 reads, 10920.0 reads per million, 102 experiments

CGAAGGGUCGGACUUGUUUAGCagaagaguuuucucuguugcaggauauggaugauuugccaaaauuuuucuaucaaaucgaaaggcuacaguagcuuuaaugcaauuuguuugguaauaucuucuauauucuuugccccuaaaaauucuucucuUGAACAAUGCCCACCCUUCGUCucuggacauauucccaugcc
((((((((.((..((((((((.(((((((((((.......((((((((((((.(((((((((((..........(((((((.(((((((...)))))))..))..))))))))))))).))).)))))))))..))).....))))))))))).))))))))..)).))))))))....(((........)))....

Structure

----------------------        C  AC        C           cucuguu   --         u   -        auuuuucuau     --  -a       c 
                      CGAAGGGU GG  UUGUUUAG agaagaguuuu       gca  ggauaugga gau uugccaaa          caaau  cg  aaggcua  
                      |||||||| ||  |||||||| |||||||||||       |||  ||||||||| ||| ||||||||          |||||  ||  ||||||| a
                      GCUUCCCA CC  AACAAGUu ucuucuuaaaa       cgu  cuuauaucu cua aaugguuu          guuua  gu  uuucgau  
ccguacccuuauacaggucuCU        C  GU        c           --auccc   uu         u   u        ----------     ac  aa       g 

Annotation confidence High

Genome context

MA_8836430: 1717-1913 [-]

Mature pab-miR3701h-5p

• Accession: MIMAT0044825
• Description: Picea abies pab-miR3701h-5p mature miRNA
• Sequence: 1 - CGAAGGGUCGGACUUGUUUAGC - 22
• Evidence: experimental ; Illumina [1]

Mature pab-miR3701h-3p

• Accession: MIMAT0057563
• Description: Picea abies pab-miR3701h-3p mature miRNA
• Sequence: 156 - UGAACAAUGCCCACCCUUCGUC - 177
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918