Stem-loop pab-MIR3701i

Accession

MI0036728

Description

Picea abies pab-MIR3701i precursor miRNA

Literature search

1 open access papers mention pab-MIR3701i
(4 sentences)

Sequence

456781 reads, 9979.0 reads per million, 102 experiments

auggguuugccugccacagaCGAAGGGUAAGCGUUGUUUGGCagaagaguuuucucuguugcaggauauggaggauuugccaaaaauaucgucaucaaaugaaaaggcuacaguagcuuuauugcaguuuguuuggcaauagccucuauguucuuugaauguaaaaacucuucucuUAAACAAUGCCCACCCUUCAUCucuggacauauucccau
(((((..((..(((((.(((.(((((((..(((((((((((.(((((((((((..(..(((.((((((((((((..((((((((...........(((((...(((((((...)))))))......)))))))))))))...)))))))))))).)))..)..))))))))))).)))))))))))..))))))).))).))).))))..)))))

Structure

     uu  cc  -   c   C       AA           C           cu ug   c            -au        aauaucgucau     ---gaa       c 
auggg  ug  ug cca aga GAAGGGU  GCGUUGUUUGG agaagaguuuu  c  uug aggauauggagg   uugccaaa           caaau      aaggcua  
|||||  ||  || ||| ||| |||||||  ||||||||||| |||||||||||  |  ||| ||||||||||||   ||||||||           |||||      ||||||| a
uaccc  au  ac ggu uCU CUUCCCA  CGUAACAAAUu ucuucucaaaa  g  agu ucuuguaucucc   aacgguuu           guuug      uuucgau  
     uu  --  a   c   A       CC           c           au ua   u            gau        -----------     acguua       g 

Annotation confidence High

Genome context

MA_9428077: 3423-3637 [+]

Mature pab-miR3701i-5p

• Accession: MIMAT0044826
• Description: Picea abies pab-miR3701i-5p mature miRNA
• Sequence: 21 - CGAAGGGUAAGCGUUGUUUGGC - 42
• Evidence: experimental ; Illumina [1]

Mature pab-miR3701i-3p

• Accession: MIMAT0057564
• Description: Picea abies pab-miR3701i-3p mature miRNA
• Sequence: 177 - UAAACAAUGCCCACCCUUCAUC - 198
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918