Stem-loop pab-MIR3710c

Accession

MI0036730

Description

Picea abies pab-MIR3710c precursor miRNA

Sequence

12498 reads, 1244.0 reads per million, 100 experiments

gcgcuccuagacucugugGGGAACCUGACGGGCCUCCAaagucugcacuugggcuggugguccacuguucgagcgcucccagacucCGUGGGGAACCUGACGGGCCUccaaagucucgacuugggcuggugc
(((((((((((((.((.((((..((((.((((.(((((.(((((((.(((((((.((((...))))))))))).))....)))))...)))))..)))).)))))))))).)))))......)))..)))))

Structure

     --   ------     c  u    AA    A    -C     --a     ----  a       u    g 
gcgcu  ccu      agacu ug gGGG  CCUG CGGG  CUCCA   agucu    gc cuugggc ggug  
|||||  |||      ||||| || ||||  |||| ||||  |||||   |||||    || ||||||| |||| u
cgugg  ggg      ucuga ac cUCC  GGGC GUCC  GGGGU   ucaga    cg gagcuug ucac  
     uc   uucagc     a  -    --    A    AA     GCc     cccu  c       -    c 

Annotation confidence Low

Genome context

MA_7592456: 382-513 [+]

Mature pab-miR3710c-5p

• Accession: MIMAT0057566
• Description: Picea abies pab-miR3710c-5p mature miRNA
• Sequence: 19 - GGGAACCUGACGGGCCUCCA - 38
• Evidence: experimental ; unknown

Mature pab-miR3710c-3p

• Accession: MIMAT0044828
• Description: Picea abies pab-miR3710c-3p mature miRNA
• Sequence: 87 - CGUGGGGAACCUGACGGGCCU - 107
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918