Stem-loop pab-MIR3710h

Accession

MI0036735

Description

Picea abies pab-MIR3710h precursor miRNA

Sequence

2677 reads, 231.0 reads per million, 86 experiments

gagucagUUGGGAACCUGACGAGUCUCCaaauucuugacuugcgcuugugcucaucucugcagacacuuCCAGAUUCGGUUGGGAACcuaacgggacuc
(((((.((((((..((((((((((((......(((.((..((.((....)).))..))...))).......)))))).))))))..))))))..)))))

Structure

     -a      AA      -      -CCaaau   --u  cu  c  u 
gaguc  gUUGGG  CCUGAC GAGUCU       ucu   ga  ug gc u
|||||  ||||||  |||||| ||||||       |||   ||  || ||  
cucag  caaucC  GGGUUG CUUAGA       aga   cu  ac cg g
     gg      AA      G      CCuucac   cgu  cu  u  u 

Annotation confidence Medium

Genome context

MA_73017: 15088-15186 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pab-MIR3710h

Mature pab-miR3710h-5p

• Accession: MIMAT0044833
• Description: Picea abies pab-miR3710h-5p mature miRNA
• Sequence: 8 - UUGGGAACCUGACGAGUCUCC - 28
• Evidence: experimental ; Illumina [1]

Mature pab-miR3710h-3p

• Accession: MIMAT0057571
• Description: Picea abies pab-miR3710h-3p mature miRNA
• Sequence: 70 - CCAGAUUCGGUUGGGAAC - 87
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918