Stem-loop pab-MIR408

Accession

MI0036737

Description

Picea abies pab-MIR408 precursor miRNA

Literature search

2 open access papers mention pab-MIR408
(2 sentences)

Sequence

26231 reads, 2273.0 reads per million, 86 experiments

aacgguagggaggcacagagagACAGGGAAGAGUUAGGGCAUGggaauugcacaggcagaaacgucugcuucugccauucucaUGCACUGCCUCUUCCCUGGCUcacuucuucuccuguu
(((((..((((((...((.(((.((((((((((.(((.((((((((((.(((.(((((((....))))))).))).)))))))))).))).)))))))))).))).)).)))))))))))

Structure

     ua      cac  a   A          U   G          u   c       a 
aacgg  gggagg   ag gag CAGGGAAGAG UAG GCAUGggaau gca aggcaga a
|||||  ||||||   || ||| |||||||||| ||| |||||||||| ||| |||||||  
uuguc  cucuuc   uc cUC GUCCCUUCUC GUC CGUacucuua cgu uucgucu c
     --      --u  a   G          C   A          c   c       g 

Annotation confidence High

Genome context

MA_101556: 25853-25972 [-]

Mature pab-miR408-5p

• Accession: MIMAT0044835
• Description: Picea abies pab-miR408-5p mature miRNA
• Sequence: 23 - ACAGGGAAGAGUUAGGGCAUG - 43
• Evidence: experimental ; Illumina [1]

Mature pab-miR408-3p

• Accession: MIMAT0057573
• Description: Picea abies pab-miR408-3p mature miRNA
• Sequence: 84 - UGCACUGCCUCUUCCCUGGCU - 104
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918