Stem-loop pab-MIR4414

Accession

MI0036747

Description

Picea abies pab-MIR4414 precursor miRNA

Sequence

2188 reads, 142.0 reads per million, 84 experiments

ugaaacUGCUGCCGGCUCAUUCAUUCAccagcucacucucaacacacagacgagacgacuggguugaugCGUGAAUGAUCCGGGAGCUGAuuuc
.(((((.(((.((((.((((((((.((.((((((((((((..(.....)..)))).)..))))))).)).)))))))).)))).))).).))))

Structure

u    - U   G    C        U  c       -- -    aa a 
 gaaa c GCU CCGG UCAUUCAU CA cagcuca  c ucuc  c c
 |||| | ||| |||| |||||||| || |||||||  | ||||  | a
 cuuu G CGA GGCC AGUAAGUG gu guugggu  g agag  g c
-    A U   G    U        C  a       ca c    ca a 

Annotation confidence High

Genome context

MA_1391: 22051-22144 [+]

Mature pab-miR4414-5p

• Accession: MIMAT0044845
• Description: Picea abies pab-miR4414-5p mature miRNA
• Sequence: 7 - UGCUGCCGGCUCAUUCAUUCA - 27
• Evidence: experimental ; Illumina [1]

Mature pab-miR4414-3p

• Accession: MIMAT0057578
• Description: Picea abies pab-miR4414-3p mature miRNA
• Sequence: 70 - CGUGAAUGAUCCGGGAGCUGA - 90
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918