Stem-loop pab-MIR482i

Accession

MI0036754

Description

Picea abies pab-MIR482i precursor miRNA

Literature search

1 open access papers mention pab-MIR482i
(5 sentences)

Sequence

212384 reads, 5351.0 reads per million, 102 experiments

aggccuuaggCUUGCGAGGAUGGGAAAAAcgcauacgguguuccuucaccgauuuauagucUUUCCUACUCCUCCCAAGCCCAuggccu
(((((...((((((.((((((((((((.((.....(((((......))))).......)).))))))).))))).))))))...)))))

Structure

     uua      C     -       A  --gcaua     uu 
aggcc   ggCUUG GAGGA UGGGAAA Ac       cggug  c
|||||   |||||| ||||| ||||||| ||       |||||   
uccgg   CCGAAC CUCCU AUCCUUU ug       gccac  c
     uAC      C     C       c  auauuua     uu 

Annotation confidence Medium

Genome context

MA_8666257: 179-267 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pab-MIR482i

Mature pab-miR482i-5p

• Accession: MIMAT0057583
• Description: Picea abies pab-miR482i-5p mature miRNA
• Sequence: 11 - CUUGCGAGGAUGGGAAAAA - 29
• Evidence: experimental ; unknown

Mature pab-miR482i-3p

• Accession: MIMAT0044852
• Description: Picea abies pab-miR482i-3p mature miRNA
• Sequence: 62 - UUUCCUACUCCUCCCAAGCCCA - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918