Stem-loop pab-MIR482k

Accession

MI0036755

Description

Picea abies pab-MIR482k precursor miRNA

Literature search

1 open access papers mention pab-MIR482k
(5 sentences)

Sequence

6080 reads, 262.0 reads per million, 88 experiments

augggUAUGGGAGGAAUGGGCAAAGCUcacugcucagagcucaaggaaugaguuguuugagUCUUCCCUAAACCUCCCAAACCcau
((((((.(((((((..((((.((.(((((..(((((...(....)...)))))....))))).)).))))..))))))).))))))

Structure

      A       AA    C  A     --cu     gag u 
augggU UGGGAGG  UGGG AA GCUca    gcuca   c c
|||||| |||||||  |||| || |||||    |||||   |  
uacCCA ACCCUCC  AUCC UU Ugagu    ugagu   g a
      A       AA    C  C     uugu     aag a 

Annotation confidence High

Genome context

MA_10433397: 18184-18269 [-]

Mature pab-miR482k-5p

• Accession: MIMAT0057584
• Description: Picea abies pab-miR482k-5p mature miRNA
• Sequence: 6 - UAUGGGAGGAAUGGGCAAAGCU - 27
• Evidence: experimental ; unknown

Mature pab-miR482k-3p

• Accession: MIMAT0044853
• Description: Picea abies pab-miR482k-3p mature miRNA
• Sequence: 62 - UCUUCCCUAAACCUCCCAAACC - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918