Stem-loop pab-MIR482l

Accession

MI0036756

Description

Picea abies pab-MIR482l precursor miRNA

Literature search

1 open access papers mention pab-MIR482l
(5 sentences)

Sequence

36083 reads, 692.0 reads per million, 101 experiments

ggguagaaaggccuuaggCUUGCGAGGAUGGGAAAAAUUcauacgguguucacucauuguuuugcagUUUUUCCUACACCUCCCAACCCcauggucuugucuuaccu
((..(((((((((...((.(((.((((.(((((((((((((.((((((......))))))..)).)))))))))))..)))).))).))...)))))).)))..)).

Structure

-  gu   -      uua  C   C    -A           -  -u      uu 
 gg  aga aaggcc   gg UUG GAGG  UGGGAAAAAUU ca  acggug  c
 ||  ||| ||||||   || ||| ||||  ||||||||||| ||  ||||||   
 cc  ucu uucugg   CC AAC CUCC  AUCCUUUUUga gu  uguuac  a
u  au   g      uac  C   C    AC           c  uu      uc 

Annotation confidence Medium

Genome context

MA_8666257: 408-514 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pab-MIR482l

Mature pab-miR482l-5p

• Accession: MIMAT0057585
• Description: Picea abies pab-miR482l-5p mature miRNA
• Sequence: 19 - CUUGCGAGGAUGGGAAAAAUU - 39
• Evidence: experimental ; unknown

Mature pab-miR482l-3p

• Accession: MIMAT0044854
• Description: Picea abies pab-miR482l-3p mature miRNA
• Sequence: 68 - UUUUUCCUACACCUCCCAACCC - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918