Stem-loop pab-MIR482m

Accession

MI0036757

Description

Picea abies pab-MIR482m precursor miRNA

Literature search

2 open access papers mention pab-MIR482m
(6 sentences)

Sequence

156845 reads, 5681.0 reads per million, 102 experiments

uguaguuuuaaggccacugggUCUGGGAGGAGAGGAAAAACCcaugcagucacucaugauuucaucugaucugaugugauauaggcauugugacagUUUUUCCAACUCCACCUAGACCuauugccuucacuaca
((((((...(((((...((((((((((.((((.(((((((((.((((.((((((((.((((......))))))).)))))....)))).).....))))))))..)))).))))))))))..))))).))))))

Structure

      uuu     cac          A    -A        ----- c    ---a     -   u    uc 
uguagu   aaggc   ugggUCUGGG GGAG  GGAAAAAC     C augc    gucac uca gauu  a
||||||   |||||   |||||||||| ||||  ||||||||     | ||||    ||||| ||| ||||   
acauca   uuccg   auCCAGAUCC CCUC  CCUUUUUg     g uacg    uagug agu cuag  u
      --c     -uu          A    AA        acagu u    gaua     u   -    uc 

Annotation confidence High

Genome context

MA_10207503: 4128-4261 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from pab-MIR482m

Mature pab-miR482m-5p

• Accession: MIMAT0057586
• Description: Picea abies pab-miR482m-5p mature miRNA
• Sequence: 22 - UCUGGGAGGAGAGGAAAAACC - 42
• Evidence: experimental ; unknown

Mature pab-miR482m-3p

• Accession: MIMAT0044855
• Description: Picea abies pab-miR482m-3p mature miRNA
• Sequence: 97 - UUUUUCCAACUCCACCUAGACC - 118
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918