Stem-loop pab-MIR482n

Accession

MI0036758

Description

Picea abies pab-MIR482n precursor miRNA

Literature search

1 open access papers mention pab-MIR482n
(5 sentences)

Sequence

5006 reads, 181.0 reads per million, 93 experiments

uaguuuuaaggccauuaggUCUCGGAGAGCAGGGAAAAACcaggcaguaacucaugaucccaugugauuuaugaacuguuacagUUUUCCCCACUCCACCGAGACCuauggccuucacua
((((...((((((((.(((((((((.(((..(((((((....((((((...((((((((......)).))))))))))))....)))))))..)))..))))))))))))))))).))))

Structure

    uuu        u         -A   CA       ACca      aac      -  cc 
uagu   aaggccau aggUCUCGG  GAG  GGGAAAA    ggcagu   ucauga uc  a
||||   |||||||| |||||||||  |||  |||||||    ||||||   |||||| ||   
auca   uuccggua uCCAGAGCC  CUC  CCCUUUU    uuguca   aguauu ag  u
    --c        -         AC   AC       gaca      ---      u  ug 

Annotation confidence High

Genome context

MA_945007: 7575-7694 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pab-MIR482n

Mature pab-miR482n-5p

• Accession: MIMAT0057587
• Description: Picea abies pab-miR482n-5p mature miRNA
• Sequence: 20 - UCUCGGAGAGCAGGGAAAAAC - 40
• Evidence: experimental ; unknown

Mature pab-miR482n-3p

• Accession: MIMAT0044856
• Description: Picea abies pab-miR482n-3p mature miRNA
• Sequence: 85 - UUUUCCCCACUCCACCGAGACC - 106
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918