Stem-loop pab-MIR482o

Accession

MI0036759

Description

Picea abies pab-MIR482o precursor miRNA

Literature search

1 open access papers mention pab-MIR482o
(5 sentences)

Sequence

3776 reads, 211.0 reads per million, 92 experiments

acagggAUGCUGUGCAGUGUGGGGCAUUAGGccugggacgauuggaaagacuuggucuauuuucuccgcuuagUCUUCCCAACCCCUCCCAUGCCuauauuccccacugcacaucccugu
(((((((...(((((((((.((((...(((((.(((((...((((.((((((.(((...........))).)))))).))))....))))).)))))...))))))))))))))))))))

Structure

       UGC         U    CAU     c     -cga    a      u   cuau 
acagggA   UGUGCAGUG GGGG   UAGGc uggga    uugg aagacu ggu    u
|||||||   ||||||||| ||||   ||||| |||||    |||| |||||| |||    u
ugucccu   acacgucac cccu   auCCG ACCCU    AACC UUCUga ucg    u
       ---         -    uau     U     CCCC    C      u   ccuc 

Annotation confidence Medium

Genome context

MA_120076: 14017-14136 [-]

Mature pab-miR482o-5p

• Accession: MIMAT0057588
• Description: Picea abies pab-miR482o-5p mature miRNA
• Sequence: 7 - AUGCUGUGCAGUGUGGGGCAUUAGG - 31
• Evidence: experimental ; unknown

Mature pab-miR482o-3p

• Accession: MIMAT0044857
• Description: Picea abies pab-miR482o-3p mature miRNA
• Sequence: 74 - UCUUCCCAACCCCUCCCAUGCC - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918