Stem-loop pab-MIR482p

Accession

MI0036760

Description

Picea abies pab-MIR482p precursor miRNA

Literature search

1 open access papers mention pab-MIR482p
(5 sentences)

Sequence

33453 reads, 788.0 reads per million, 99 experiments

gggauuuugugguuugagggcauugggAGUGGGCGGAACGGGCAAAACUcagucaguucguucauucguuagugaacccauccaaucugaucgggUUUUCCCGGCUCCGCCCAUUCCuacaguccucacuacgcauccc
(((((..((((((..((((((..((((((((((((((.((((.(((((((.(((((...(((((((....))))))).........))))).)))))))))))..))))))))))))))..)))))))))))).)))))

Structure

     uu      uu      au              -A    C       a     ------uuc       c 
gggau  uguggu  gagggc  ugggAGUGGGCGGA  CGGG AAAACUc gucag         guucauu g
|||||  ||||||  ||||||  ||||||||||||||  |||| ||||||| |||||         |||||||  
cccua  gcauca  cuccug  auCCUUACCCGCCU  GCCC UUUUggg uaguc         caaguga u
     -c      --      ac              CG    -       c     uaaccuacc       u 

Annotation confidence High

Genome context

MA_14099: 39747-39885 [-]

Mature pab-miR482p-5p

• Accession: MIMAT0057589
• Description: Picea abies pab-miR482p-5p mature miRNA
• Sequence: 28 - AGUGGGCGGAACGGGCAAAACU - 49
• Evidence: experimental ; unknown

Mature pab-miR482p-3p

• Accession: MIMAT0044858
• Description: Picea abies pab-miR482p-3p mature miRNA
• Sequence: 96 - UUUUCCCGGCUCCGCCCAUUCC - 117
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918