Stem-loop pab-MIR482r

Accession

MI0036761

Description

Picea abies pab-MIR482r precursor miRNA

Literature search

2 open access papers mention pab-MIR482r
(8 sentences)

Sequence

61740 reads, 1900.0 reads per million, 99 experiments

uggcaacucucguucgcggaaacucuacaaguucgcgUGAUUGGUGUGUAUGGAGUGGccccguuggaaaaaucuuguugcucgauauuaucuacauuaacuacaagugauugaugcgucugauaaugugauuuagucagagugucucaaguuuguugagggaaaaauaaauuagagaugguugaaauucaguuuacagaguaaaccauuucauucauaucuaaguugauucgcugagcaaauugagaaauuaugagccaaaucacaauaucaugcauacaucacugaccuuguaaguguuguauuguagacuauuuugagcaacgaugUCUUUCCAACGCCGCCCAUUCCauauacaccaaucacgcuaauuuguggaguuucagcgaacaaagaguauuca
.....(((((.((((((.(((((((((((((((.(((((((((((((((((((((((((..(((((((((.((.(((((((((((.((..((((((.((((((((((((((..(((((..(((((.((((((((.((((.(((.((((((.((((((.((.(((...(((.(((((.((((.((((((...((((((...)))))).)))))).)))).))))).))).))).)).)))))))))))).))).))).).)))))))).))))))))))..)))))).....))))...))))...))))))..)).))))))))))).)).)))))))))..).)))))))))))))))))))))))).))))))))))))))).))))))..))))).....

Structure

uggca     -c      g               c                        - cc         a  c           u  ua      --u    ---    -----      ug     uc     a        a -   g   g      g      g  g   aaa   a     g    u      uca      a 
     acucu  guucgc gaaacucuacaaguu gcgUGAUUGGUGUGUAUGGAGUGG c  cguuggaaa au uuguugcucga au  ucuaca   uaac   uaca     agugau  augcg  ugaua ugugauuu g uca agu ucucaa uuuguu ag gaa   uaa uuaga augg ugaaau   guuuac  
     |||||  |||||| ||||||||||||||| |||||||||||||||||||||||| |  ||||||||| || ||||||||||| ||  ||||||   ||||   ||||     ||||||  |||||  ||||| |||||||| | ||| ||| |||||| |||||| || |||   ||| ||||| |||| ||||||   |||||| g
     ugaga  caagcg cuuugagguguuuaa cgcacuaaccacauauaCCUUACC G  GCAACCUUU Ug agcaacgaguu ua  agaugu   guug   augu     ucacua  uacgu  acuau acacuaaa c agu uua agaguu aaacga uc cuu   guu aaucu uacu acuuua   caaaug  
acuua     aa      a               u                        C CC         C  u           u  uc      uau    uga    uccag      ca     --     a        c g   a   a      -      g  g   --a   g     a    u      --c      a 

Annotation confidence Low

Genome context

MA_31723: 3853-4255 [-]

Mature pab-miR482r-5p

• Accession: MIMAT0057590
• Description: Picea abies pab-miR482r-5p mature miRNA
• Sequence: 38 - UGAUUGGUGUGUAUGGAGUGG - 58
• Evidence: experimental ; unknown

Mature pab-miR482r-3p

• Accession: MIMAT0044859
• Description: Picea abies pab-miR482r-3p mature miRNA
• Sequence: 330 - UCUUUCCAACGCCGCCCAUUCC - 351
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918